You have to move the VLS, the interference from the mast and funnels makes them nonfunctional. Also, it looks like you have a couple roll up doors right where the VLS magizine would be, what are those for?
Armor really isn't important, and the weight of it is one of the reasons such a conversion would never take place. Sure it would stop small boat attacks and most naval guns in service these days but not ASMs or torpedoes, the most likely threats to it. There is a reason we don't use it anymore. More sensors and armament gets you more bang for your buck in the modern age.
I wish there was a top view so this could be confirmed but the idea is that the VLS deck is wide enough that the VLS modules are far enough to port and starboard, (but not at edge of deck), as not to be centerlined and be interfered with by the masts and funnels. The roll up doors are for mission modules and boat stowage. as there is space, though not a lot, before your against the VLS magazines. The captain can park his car there also (just kidding). The deck is extended around the aft funnel and actually overhangs AGS-L #4 slightly, limiting it's trajectory a little. (I originally omitted #4, but decided it was still usable for most situations.) With this deck overhang, (which also explains the deeper shadow line) the Harpoons are not as close to the aft funnel as the side view appears, but given a little space away from the vents.
Armor is important. Had the Montanas been built, as planned, the armor belt, which can not be duplicated by modern manufacturing methods, would be nearly impervious to any modern torpedo. Again, we know that there is no way a conversion of this magnitude would ever be done in real life.
I will be working on it, but it will probably be a while. I'll get those corrections made to the radars, directors, RAMS, stray pixels, blurred stuff etc., and will re-review all the suggestions made. Again, thanks to each of you for your input. (Even you Ace)